This function counts the frequency of a specific character or pattern in a given sequence.
Usage
count_seq_pattern(seq, pattern)
Arguments
- seq
A character vector representing the sequence to count the pattern in.
- pattern
A character string representing the pattern to count in the sequence.
Value
An integer representing the count of the pattern in the sequence.
Examples
seq <- "ATGGTGCTCCGTGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCTACGTAG"
count_seq_pattern(seq, "CG")
#> [1] 31
# [1] 31
