Function reference
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clean_DNA_file() - Clean DNA file
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clean_DNA_sequence() - Clean DNA sequence
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clean_RNA_file() - Clean RNA file
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clean_RNA_sequence() - Clean RNA sequence
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clean_sequence() - Clean DNA or RNA sequence
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count_bases() - Count the number of A's, C's, G's, and T's in a DNA sequence
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count_seq_pattern() - Count frequency of a pattern in a sequence
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dna_to_protein() - Translation of a DNA sequence
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dna_to_rna() - Transcription of a DNA sequence
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fastq_to_fasta() - Convert a FASTQ file to a FASTA file
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gc_content() - Calculate GC content of a DNA sequence
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gc_content_file() - GC content of sequences in a multi FASTA file
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read.fasta_to_df() - Read a fasta file into a dataframe and assign to the environment
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read.fasta_to_list() - Read a fasta file into a list and assign to the environment
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read.fastq_to_df() - Read a Fastq file and store it as a dataframe
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read.fastq_to_list() - Read a Fastq file and store it as a list
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reverse_complement() - Generate Reverse Complement of DNA sequence
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rna_reverse_complement() - Generate Reverse Complement of DNA sequence
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rna_to_dna() - Reverse Transcription of a RNA sequence
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rna_to_protein() - Translation of a RNA sequence
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write.df_to_fasta() - Write a data frame to a fasta file
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write.df_to_fastq() - Write a FASTQ file from a dataframe of reads
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write.list_to_fasta() - Write a list of sequences to a FASTA file
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write.list_to_fastq() - Write a list of sequences and quality scores to a FASTQ file