Read a fasta file into a dataframe and assign to the environment

This function reads a fasta file and creates a dataframe with two columns: Header and Sequence. The dataframe is then assigned to the environment with the name same as the fasta file name but without the .fasta extension.

Usage

read.fasta_to_df(fasta_file)

Arguments

fasta_file: The path to the fasta file to be read.

Value

This function does not return anything. It assigns the resulting dataframe to the environment.

Examples


sample_file_path <- system.file("extdata", "sample_fa.fasta", package = "baseq")

read.fasta_to_df(sample_file_path)
#> File C:/Users/BSL CTCRI/AppData/Local/Temp/RtmpYlDm86/temp_libpath49301e5117b7/baseq/extdata/sample_fa.fasta assigned as a dataframe with name sample_fa